Gene
Taestivum Traes 7AS 3252B0497
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AS_3252B0497 Traes_7AS_3252B0497 |
ta_iwgsc_7as_v1_4190728 | 8677 | 12488 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AS_3252B0497.1 Traes_7AS_3252B0497.1 PAC:31821190 |
Low | No | 1304 | Get ORF Coding potential... Type: noncoding Potential: -0.039 Folding energies... MFEI: -26.794 AMFE: -0.582 GC content %: 46.012 | |
| Taestivum_Traes_7AS_3252B0497.11 Traes_7AS_3252B0497.11 PAC:31821192 |
High | No | 734 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -23.120 AMFE: -0.593 GC content %: 38.965 | |
| Taestivum_Traes_7AS_3252B0497.12 Traes_7AS_3252B0497.12 PAC:31821193 |
High | No | 665 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -24.030 AMFE: -0.608 GC content %: 39.549 | |
| Taestivum_Traes_7AS_3252B0497.13 Traes_7AS_3252B0497.13 PAC:31821195 |
High | No | 288 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -22.569 AMFE: -0.474 GC content %: 47.569 | |
| Taestivum_Traes_7AS_3252B0497.14 Traes_7AS_3252B0497.14 PAC:31821196 |
High | No | 722 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -23.186 AMFE: -0.583 GC content %: 39.751 | |
| Taestivum_Traes_7AS_3252B0497.15 Traes_7AS_3252B0497.15 PAC:31821194 |
High | No | 607 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -23.196 AMFE: -0.570 GC content %: 40.692 | |
| Taestivum_Traes_7AS_3252B0497.16 Traes_7AS_3252B0497.16 PAC:31821197 |
High | No | 723 | Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -23.472 AMFE: -0.631 GC content %: 37.206 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
