Gene
Taestivum Traes 7AS 374ABB78E
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AS_374ABB78E Traes_7AS_374ABB78E |
ta_iwgsc_7as_v1_4252410 | 20727 | 23048 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AS_374ABB78E.2 Traes_7AS_374ABB78E.2 PAC:32005583 |
High | No | 532 | Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -27.274 AMFE: -0.605 GC content %: 45.113 | |
| Taestivum_Traes_7AS_374ABB78E.3 Traes_7AS_374ABB78E.3 PAC:32005584 |
Low | No | 1031 | Get ORF Coding potential... Type: noncoding Potential: -0.486 Folding energies... MFEI: -25.713 AMFE: -0.598 GC content %: 42.968 | |
| Taestivum_Traes_7AS_374ABB78E.4 Traes_7AS_374ABB78E.4 PAC:32005585 |
Low | No | 1074 | Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -26.266 AMFE: -0.608 GC content %: 43.203 | |
| Taestivum_Traes_7AS_374ABB78E.5 Traes_7AS_374ABB78E.5 PAC:32005586 |
Low | No | 979 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -25.506 AMFE: -0.603 GC content %: 42.288 | |
| Taestivum_Traes_7AS_374ABB78E.6 Traes_7AS_374ABB78E.6 PAC:32005588 |
Low | No | 1146 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -25.890 AMFE: -0.610 GC content %: 42.408 | |
| Taestivum_Traes_7AS_374ABB78E.7 Traes_7AS_374ABB78E.7 PAC:32005587 |
Low | No | 884 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -26.075 AMFE: -0.603 GC content %: 43.213 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_7AS_374ABB78E.3 | RepBase (RepeatMasker) | 2014-01-31 | MuDR-7_VV | |
| Taestivum_Traes_7AS_374ABB78E.4 | RepBase (RepeatMasker) | 2014-01-31 | MuDR-7_VV | |
| Taestivum_Traes_7AS_374ABB78E.5 | RepBase (RepeatMasker) | 2014-01-31 | MuDR-7_VV | |
| Taestivum_Traes_7AS_374ABB78E.6 | RepBase (RepeatMasker) | 2014-01-31 | MuDR-7_VV | |
| Taestivum_Traes_7AS_374ABB78E.7 | RepBase (RepeatMasker) | 2014-01-31 | MuDR-7_VV |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
