GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AS_375771130 Traes_7AS_375771130	ta_iwgsc_7as_v1_4215177	947	2740	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AS_375771130.1 Traes_7AS_375771130.1 PAC:31743361	Low	No	533		Get ORF Coding potential... Type: noncoding Potential: -0.167 Folding energies... MFEI: -27.617 AMFE: -0.562 GC content %: 49.156
Taestivum_Traes_7AS_375771130.2 Traes_7AS_375771130.2 PAC:31743362	Low	No	418		Get ORF Coding potential... Type: noncoding Potential: -0.100 Folding energies... MFEI: -27.895 AMFE: -0.535 GC content %: 52.153

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).