Gene

Taestivum Traes 7AS 7126B96FD

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Taestivum_Traes_7AS_7126B96FD
Traes_7AS_7126B96FD
ta_iwgsc_7as_v1_4186969 1426 1674 Phytozome v2.2 Triticum_aestivum
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Taestivum_Traes_7AS_7126B96FD.1
Traes_7AS_7126B96FD.1
PAC:31862820
Low No 249
Coding potential...
Type: noncoding Potential: -1.005
Folding energies...
MFEI: -27.631 AMFE: -0.573
GC content
%: 48.193


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Taestivum_Traes_7AS_7126B96FD.1  RepBase (RepeatMasker) 2014-01-31 Mariner_MT


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Traes_7AS_7126B96FD.png