Gene
Taestivum Traes 7AS 71541512F
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AS_71541512F Traes_7AS_71541512F |
ta_iwgsc_7as_v1_4253826 | 1239 | 5304 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AS_71541512F.1 Traes_7AS_71541512F.1 PAC:31971233 |
Low | No | 2624 | Get ORF Coding potential... Type: noncoding Potential: -0.308 Folding energies... MFEI: -29.375 AMFE: -0.669 GC content %: 43.941 | |
| Taestivum_Traes_7AS_71541512F.10 Traes_7AS_71541512F.10 PAC:31971229 |
Low | No | 2323 | Get ORF Coding potential... Type: noncoding Potential: -0.299 Folding energies... MFEI: -29.600 AMFE: -0.671 GC content %: 44.124 | |
| Taestivum_Traes_7AS_71541512F.11 Traes_7AS_71541512F.11 PAC:31971230 |
Low | No | 2568 | Get ORF Coding potential... Type: noncoding Potential: -0.305 Folding energies... MFEI: -29.416 AMFE: -0.666 GC content %: 44.198 | |
| Taestivum_Traes_7AS_71541512F.12 Traes_7AS_71541512F.12 PAC:31971232 |
Low | No | 2288 | Get ORF Coding potential... Type: noncoding Potential: -0.351 Folding energies... MFEI: -30.201 AMFE: -0.672 GC content %: 44.930 | |
| Taestivum_Traes_7AS_71541512F.13 Traes_7AS_71541512F.13 PAC:31971234 |
Low | No | 1489 | Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -29.275 AMFE: -0.639 GC content %: 45.803 | |
| Taestivum_Traes_7AS_71541512F.14 Traes_7AS_71541512F.14 PAC:31971235 |
Low | No | 2284 | Get ORF Coding potential... Type: noncoding Potential: -0.142 Folding energies... MFEI: -30.180 AMFE: -0.672 GC content %: 44.877 | |
| Taestivum_Traes_7AS_71541512F.4 Traes_7AS_71541512F.4 PAC:31971224 |
Low | No | 2250 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -30.036 AMFE: -0.672 GC content %: 44.667 | |
| Taestivum_Traes_7AS_71541512F.5 Traes_7AS_71541512F.5 PAC:31971227 |
Low | No | 1256 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -28.718 AMFE: -0.683 GC content %: 42.038 | |
| Taestivum_Traes_7AS_71541512F.6 Traes_7AS_71541512F.6 PAC:31971225 |
Low | No | 1907 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -30.808 AMFE: -0.659 GC content %: 46.723 | |
| Taestivum_Traes_7AS_71541512F.7 Traes_7AS_71541512F.7 PAC:31971226 |
Low | No | 1617 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -30.476 AMFE: -0.660 GC content %: 46.197 | |
| Taestivum_Traes_7AS_71541512F.8 Traes_7AS_71541512F.8 PAC:31971228 |
Low | No | 1772 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -30.920 AMFE: -0.656 GC content %: 47.122 | |
| Taestivum_Traes_7AS_71541512F.9 Traes_7AS_71541512F.9 PAC:31971231 |
Low | No | 2104 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -28.669 AMFE: -0.652 GC content %: 43.964 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
