Gene
Taestivum Traes 7AS 988EC03B9
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AS_988EC03B9 Traes_7AS_988EC03B9 |
ta_iwgsc_7as_v1_4210571 | 1566 | 7117 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AS_988EC03B9.1 Traes_7AS_988EC03B9.1 PAC:31865630 |
Low | Yes | 1736 | Get ORF Coding potential... Type: noncoding Potential: -0.611 Folding energies... MFEI: -36.054 AMFE: -0.701 GC content %: 51.440 | |
| Taestivum_Traes_7AS_988EC03B9.10 Traes_7AS_988EC03B9.10 PAC:31865636 |
Low | Yes | 1842 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -35.841 AMFE: -0.699 GC content %: 51.249 | |
| Taestivum_Traes_7AS_988EC03B9.11 Traes_7AS_988EC03B9.11 PAC:31865635 |
Low | Yes | 1963 | Get ORF Coding potential... Type: noncoding Potential: -0.624 Folding energies... MFEI: -35.257 AMFE: -0.701 GC content %: 50.331 | |
| Taestivum_Traes_7AS_988EC03B9.12 Traes_7AS_988EC03B9.12 PAC:31865632 |
Low | Yes | 1804 | Get ORF Coding potential... Type: noncoding Potential: -0.570 Folding energies... MFEI: -36.447 AMFE: -0.701 GC content %: 51.996 | |
| Taestivum_Traes_7AS_988EC03B9.13 Traes_7AS_988EC03B9.13 PAC:31865634 |
Low | Yes | 1944 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -35.329 AMFE: -0.702 GC content %: 50.360 | |
| Taestivum_Traes_7AS_988EC03B9.14 Traes_7AS_988EC03B9.14 PAC:31865633 |
Low | Yes | 1901 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -35.618 AMFE: -0.699 GC content %: 50.973 | |
| Taestivum_Traes_7AS_988EC03B9.15 Traes_7AS_988EC03B9.15 PAC:31865637 |
Low | Yes | 1820 | Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -36.747 AMFE: -0.708 GC content %: 51.923 | |
| Taestivum_Traes_7AS_988EC03B9.16 Traes_7AS_988EC03B9.16 PAC:31865639 |
Low | Yes | 1988 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -35.327 AMFE: -0.702 GC content %: 50.302 | |
| Taestivum_Traes_7AS_988EC03B9.17 Traes_7AS_988EC03B9.17 PAC:31865638 |
Low | Yes | 1886 | Get ORF Coding potential... Type: noncoding Potential: -0.746 Folding energies... MFEI: -36.278 AMFE: -0.707 GC content %: 51.326 | |
| Taestivum_Traes_7AS_988EC03B9.18 Traes_7AS_988EC03B9.18 PAC:31865640 |
Low | Yes | 1872 | Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -36.362 AMFE: -0.708 GC content %: 51.335 | |
| Taestivum_Traes_7AS_988EC03B9.19 Traes_7AS_988EC03B9.19 PAC:31865641 |
Low | Yes | 1857 | Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -36.037 AMFE: -0.702 GC content %: 51.319 | |
| Taestivum_Traes_7AS_988EC03B9.2 Traes_7AS_988EC03B9.2 PAC:31865625 |
Low | Yes | 1740 | Get ORF Coding potential... Type: noncoding Potential: -0.573 Folding energies... MFEI: -36.759 AMFE: -0.699 GC content %: 52.586 | |
| Taestivum_Traes_7AS_988EC03B9.20 Traes_7AS_988EC03B9.20 PAC:31865642 |
Low | Yes | 1870 | Get ORF Coding potential... Type: noncoding Potential: -0.707 Folding energies... MFEI: -35.797 AMFE: -0.704 GC content %: 50.856 | |
| Taestivum_Traes_7AS_988EC03B9.21 Traes_7AS_988EC03B9.21 PAC:31865643 |
High | No | 750 | Get ORF Coding potential... Type: noncoding Potential: -0.640 Folding energies... MFEI: -28.533 AMFE: -0.682 GC content %: 41.867 | |
| Taestivum_Traes_7AS_988EC03B9.22 Traes_7AS_988EC03B9.22 PAC:31865644 |
High | No | 447 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -20.447 AMFE: -0.605 GC content %: 33.781 | |
| Taestivum_Traes_7AS_988EC03B9.3 Traes_7AS_988EC03B9.3 PAC:31865627 |
Low | No | 1215 | Get ORF Coding potential... Type: noncoding Potential: -0.497 Folding energies... MFEI: -25.918 AMFE: -0.666 GC content %: 38.930 | |
| Taestivum_Traes_7AS_988EC03B9.4 Traes_7AS_988EC03B9.4 PAC:31865629 |
Low | Yes | 1789 | Get ORF Coding potential... Type: noncoding Potential: -0.615 Folding energies... MFEI: -35.852 AMFE: -0.695 GC content %: 51.593 | |
| Taestivum_Traes_7AS_988EC03B9.5 Traes_7AS_988EC03B9.5 PAC:31865631 |
Low | Yes | 1808 | Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -36.438 AMFE: -0.700 GC content %: 52.046 | |
| Taestivum_Traes_7AS_988EC03B9.6 Traes_7AS_988EC03B9.6 PAC:31865628 |
Low | Yes | 1836 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -36.095 AMFE: -0.702 GC content %: 51.416 | |
| Taestivum_Traes_7AS_988EC03B9.7 Traes_7AS_988EC03B9.7 PAC:31865623 |
Low | No | 1795 | Get ORF Coding potential... Type: noncoding Potential: -0.570 Folding energies... MFEI: -35.398 AMFE: -0.689 GC content %: 51.365 | |
| Taestivum_Traes_7AS_988EC03B9.8 Traes_7AS_988EC03B9.8 PAC:31865626 |
Low | Yes | 1895 | Get ORF Coding potential... Type: noncoding Potential: -0.621 Folding energies... MFEI: -36.195 AMFE: -0.706 GC content %: 51.240 | |
| Taestivum_Traes_7AS_988EC03B9.9 Traes_7AS_988EC03B9.9 PAC:31865624 |
Low | Yes | 1868 | Get ORF Coding potential... Type: noncoding Potential: -0.576 Folding energies... MFEI: -35.476 AMFE: -0.696 GC content %: 50.964 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
