GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AS_ADEF67B9C Traes_7AS_ADEF67B9C	ta_iwgsc_7as_v1_4252405	1907	2694	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AS_ADEF67B9C.1 Traes_7AS_ADEF67B9C.1 PAC:31775899	Low	No	708		Get ORF Coding potential... Type: noncoding Potential: -0.334 Folding energies... MFEI: -29.435 AMFE: -0.668 GC content %: 44.068
Taestivum_Traes_7AS_ADEF67B9C.2 Traes_7AS_ADEF67B9C.2 PAC:31775898	High	No	546		Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -29.707 AMFE: -0.676 GC content %: 43.956

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).