Gene
Taestivum Traes 7AS AF7434175
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AS_AF7434175 Traes_7AS_AF7434175 |
ta_iwgsc_7as_v1_4208248 | 7066 | 9017 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AS_AF7434175.1 Traes_7AS_AF7434175.1 PAC:31868274 |
High | No | 772 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -29.197 AMFE: -0.596 GC content %: 48.964 | |
| Taestivum_Traes_7AS_AF7434175.2 Traes_7AS_AF7434175.2 PAC:31868271 |
High | No | 793 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -29.420 AMFE: -0.586 GC content %: 50.189 | |
| Taestivum_Traes_7AS_AF7434175.3 Traes_7AS_AF7434175.3 PAC:31868272 |
High | No | 788 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -29.975 AMFE: -0.593 GC content %: 50.508 | |
| Taestivum_Traes_7AS_AF7434175.4 Traes_7AS_AF7434175.4 PAC:31868275 |
High | No | 837 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -29.044 AMFE: -0.591 GC content %: 49.104 | |
| Taestivum_Traes_7AS_AF7434175.5 Traes_7AS_AF7434175.5 PAC:31868276 |
High | No | 566 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -25.919 AMFE: -0.582 GC content %: 44.523 | |
| Taestivum_Traes_7AS_AF7434175.6 Traes_7AS_AF7434175.6 PAC:31868273 |
High | No | 747 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -30.669 AMFE: -0.589 GC content %: 52.075 | |
| Taestivum_Traes_7AS_AF7434175.7 Traes_7AS_AF7434175.7 PAC:31868277 |
High | No | 655 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -26.076 AMFE: -0.587 GC content %: 44.427 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
