GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AS_B94033ED5 Traes_7AS_B94033ED5	ta_iwgsc_7as_v1_4256367	95	2396	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AS_B94033ED5.1 Traes_7AS_B94033ED5.1 PAC:31765302	Low	No	1054		Get ORF Coding potential... Type: noncoding Potential: -0.396 Folding energies... MFEI: -27.135 AMFE: -0.650 GC content %: 41.746
Taestivum_Traes_7AS_B94033ED5.2 Traes_7AS_B94033ED5.2 PAC:31765303	Low	No	412		Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -32.209 AMFE: -0.663 GC content %: 48.544
Taestivum_Traes_7AS_B94033ED5.3 Traes_7AS_B94033ED5.3 PAC:31765304	Low	No	813		Get ORF Coding potential... Type: noncoding Potential: -0.749 Folding energies... MFEI: -27.552 AMFE: -0.633 GC content %: 43.542

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).