GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AS_DE398E5BF Traes_7AS_DE398E5BF	ta_iwgsc_7as_v1_4219552	4220	4626	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AS_DE398E5BF.1 Traes_7AS_DE398E5BF.1 PAC:31781329	High	No	279		Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -22.222 AMFE: -0.360 GC content %: 61.649
Taestivum_Traes_7AS_DE398E5BF.2 Traes_7AS_DE398E5BF.2 PAC:31781330	High	No	326		Get ORF Coding potential... Type: noncoding Potential: -0.871 Folding energies... MFEI: -26.687 AMFE: -0.446 GC content %: 59.816

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).