Gene
Taestivum Traes 7AS E66C3CC1B
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AS_E66C3CC1B Traes_7AS_E66C3CC1B |
ta_iwgsc_7as_v1_4186043 | 1563 | 5160 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AS_E66C3CC1B.10 Traes_7AS_E66C3CC1B.10 PAC:31915251 |
Low | No | 586 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -24.078 AMFE: -0.616 GC content %: 39.078 | |
| Taestivum_Traes_7AS_E66C3CC1B.11 Traes_7AS_E66C3CC1B.11 PAC:31915254 |
Low | No | 1236 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -27.557 AMFE: -0.623 GC content %: 44.256 | |
| Taestivum_Traes_7AS_E66C3CC1B.2 Traes_7AS_E66C3CC1B.2 PAC:31915242 |
High | No | 1932 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -25.300 AMFE: -0.614 GC content %: 41.201 | |
| Taestivum_Traes_7AS_E66C3CC1B.20 Traes_7AS_E66C3CC1B.20 PAC:31915256 |
Low | No | 2280 | Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -24.908 AMFE: -0.613 GC content %: 40.614 | |
| Taestivum_Traes_7AS_E66C3CC1B.28 Traes_7AS_E66C3CC1B.28 PAC:31915269 |
High | No | 2003 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -25.262 AMFE: -0.617 GC content %: 40.939 | |
| Taestivum_Traes_7AS_E66C3CC1B.29 Traes_7AS_E66C3CC1B.29 PAC:31915270 |
High | No | 1939 | Get ORF Coding potential... Type: noncoding Potential: -0.274 Folding energies... MFEI: -22.481 AMFE: -0.626 GC content %: 35.895 | |
| Taestivum_Traes_7AS_E66C3CC1B.30 Traes_7AS_E66C3CC1B.30 PAC:31915271 |
High | No | 1985 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -24.932 AMFE: -0.613 GC content %: 40.705 | |
| Taestivum_Traes_7AS_E66C3CC1B.31 Traes_7AS_E66C3CC1B.31 PAC:31915272 |
High | No | 2008 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -25.443 AMFE: -0.622 GC content %: 40.886 | |
| Taestivum_Traes_7AS_E66C3CC1B.32 Traes_7AS_E66C3CC1B.32 PAC:31915273 |
High | No | 1955 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -25.043 AMFE: -0.621 GC content %: 40.307 | |
| Taestivum_Traes_7AS_E66C3CC1B.33 Traes_7AS_E66C3CC1B.33 PAC:31915274 |
Low | No | 835 | Get ORF Coding potential... Type: noncoding Potential: -0.074 Folding energies... MFEI: -24.084 AMFE: -0.613 GC content %: 39.281 | |
| Taestivum_Traes_7AS_E66C3CC1B.5 Traes_7AS_E66C3CC1B.5 PAC:31915246 |
Low | No | 1393 | Get ORF Coding potential... Type: noncoding Potential: -0.042 Folding energies... MFEI: -26.626 AMFE: -0.618 GC content %: 43.073 | |
| Taestivum_Traes_7AS_E66C3CC1B.6 Traes_7AS_E66C3CC1B.6 PAC:31915245 |
Low | No | 1236 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -26.659 AMFE: -0.608 GC content %: 43.851 | |
| Taestivum_Traes_7AS_E66C3CC1B.7 Traes_7AS_E66C3CC1B.7 PAC:31915252 |
Low | No | 604 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -23.079 AMFE: -0.606 GC content %: 38.079 | |
| Taestivum_Traes_7AS_E66C3CC1B.8 Traes_7AS_E66C3CC1B.8 PAC:31915249 |
High | No | 2291 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -23.326 AMFE: -0.619 GC content %: 37.713 | |
| Taestivum_Traes_7AS_E66C3CC1B.9 Traes_7AS_E66C3CC1B.9 PAC:31915250 |
Low | No | 1241 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -27.139 AMFE: -0.624 GC content %: 43.513 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
