GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AS_EBDD66E9A Traes_7AS_EBDD66E9A	ta_iwgsc_7as_v1_4112916	27	1731	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AS_EBDD66E9A.1 Traes_7AS_EBDD66E9A.1 PAC:31964310	Low	No	933		Get ORF Coding potential... Type: noncoding Potential: -0.369 Folding energies... MFEI: -35.584 AMFE: -0.687 GC content %: 51.768
Taestivum_Traes_7AS_EBDD66E9A.2 Traes_7AS_EBDD66E9A.2 PAC:31964311	Low	No	789		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -30.494 AMFE: -0.701 GC content %: 43.473

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).