Gene
Taestivum Traes 7AS F6548D955
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AS_F6548D955 Traes_7AS_F6548D955 |
ta_iwgsc_7as_v1_4204124 | 3639 | 13840 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AS_F6548D955.1 Traes_7AS_F6548D955.1 PAC:31751110 |
Low | No | 984 | Get ORF Coding potential... Type: noncoding Potential: -0.526 Folding energies... MFEI: -29.065 AMFE: -0.611 GC content %: 47.561 | |
| Taestivum_Traes_7AS_F6548D955.10 Traes_7AS_F6548D955.10 PAC:31751115 |
Low | No | 1794 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -29.916 AMFE: -0.628 GC content %: 47.659 | |
| Taestivum_Traes_7AS_F6548D955.4 Traes_7AS_F6548D955.4 PAC:31751108 |
Low | No | 1050 | Get ORF Coding potential... Type: noncoding Potential: -0.449 Folding energies... MFEI: -29.362 AMFE: -0.609 GC content %: 48.190 | |
| Taestivum_Traes_7AS_F6548D955.5 Traes_7AS_F6548D955.5 PAC:31751109 |
High | No | 883 | Get ORF Coding potential... Type: noncoding Potential: -0.488 Folding energies... MFEI: -29.037 AMFE: -0.600 GC content %: 48.358 | |
| Taestivum_Traes_7AS_F6548D955.6 Traes_7AS_F6548D955.6 PAC:31751111 |
High | No | 660 | Get ORF Coding potential... Type: noncoding Potential: -0.544 Folding energies... MFEI: -29.530 AMFE: -0.607 GC content %: 48.636 | |
| Taestivum_Traes_7AS_F6548D955.7 Traes_7AS_F6548D955.7 PAC:31751112 |
High | No | 865 | Get ORF Coding potential... Type: noncoding Potential: -0.521 Folding energies... MFEI: -28.543 AMFE: -0.596 GC content %: 47.861 | |
| Taestivum_Traes_7AS_F6548D955.9 Traes_7AS_F6548D955.9 PAC:31751114 |
Low | No | 1660 | Get ORF Coding potential... Type: noncoding Potential: -0.235 Folding energies... MFEI: -29.295 AMFE: -0.584 GC content %: 50.181 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_7AS_F6548D955.10 | RepBase (RepeatMasker) | 2014-01-31 | Copia-62_SB-I | |
| Taestivum_Traes_7AS_F6548D955.4 | RepBase (RepeatMasker) | 2014-01-31 | Isabelle_TM | |
| Taestivum_Traes_7AS_F6548D955.9 | RepBase (RepeatMasker) | 2014-01-31 | Copia-62_SB-I | |
| Taestivum_Traes_7AS_F6548D955.1 | RepBase (RepeatMasker) | 2014-01-31 | Isabelle_TM |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
