Gene
Taestivum Traes 7AS F69BFB93E
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AS_F69BFB93E Traes_7AS_F69BFB93E |
ta_iwgsc_7as_v1_4219872 | 3535 | 8002 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AS_F69BFB93E.1 Traes_7AS_F69BFB93E.1 PAC:31975585 |
High | No | 2383 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -28.166 AMFE: -0.627 GC content %: 44.943 | |
| Taestivum_Traes_7AS_F69BFB93E.10 Traes_7AS_F69BFB93E.10 PAC:31975587 |
High | No | 3204 | Get ORF Coding potential... Type: noncoding Potential: -0.759 Folding energies... MFEI: -27.400 AMFE: -0.637 GC content %: 43.040 | |
| Taestivum_Traes_7AS_F69BFB93E.11 Traes_7AS_F69BFB93E.11 PAC:31975588 |
High | No | 3547 | Get ORF Coding potential... Type: noncoding Potential: -0.669 Folding energies... MFEI: -26.622 AMFE: -0.635 GC content %: 41.895 | |
| Taestivum_Traes_7AS_F69BFB93E.12 Traes_7AS_F69BFB93E.12 PAC:31975592 |
High | No | 3567 | Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -26.678 AMFE: -0.641 GC content %: 41.632 | |
| Taestivum_Traes_7AS_F69BFB93E.15 Traes_7AS_F69BFB93E.15 PAC:31975593 |
High | No | 2497 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -27.982 AMFE: -0.625 GC content %: 44.774 | |
| Taestivum_Traes_7AS_F69BFB93E.16 Traes_7AS_F69BFB93E.16 PAC:31975596 |
High | No | 2387 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -28.186 AMFE: -0.621 GC content %: 45.371 | |
| Taestivum_Traes_7AS_F69BFB93E.17 Traes_7AS_F69BFB93E.17 PAC:31975590 |
High | No | 2508 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -27.659 AMFE: -0.619 GC content %: 44.697 | |
| Taestivum_Traes_7AS_F69BFB93E.18 Traes_7AS_F69BFB93E.18 PAC:31975600 |
High | No | 3401 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -26.666 AMFE: -0.633 GC content %: 42.135 | |
| Taestivum_Traes_7AS_F69BFB93E.19 Traes_7AS_F69BFB93E.19 PAC:31975597 |
High | No | 2516 | Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -27.905 AMFE: -0.627 GC content %: 44.475 | |
| Taestivum_Traes_7AS_F69BFB93E.20 Traes_7AS_F69BFB93E.20 PAC:31975601 |
High | No | 1684 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -27.476 AMFE: -0.623 GC content %: 44.121 | |
| Taestivum_Traes_7AS_F69BFB93E.21 Traes_7AS_F69BFB93E.21 PAC:31975599 |
High | No | 2337 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -28.019 AMFE: -0.630 GC content %: 44.459 | |
| Taestivum_Traes_7AS_F69BFB93E.22 Traes_7AS_F69BFB93E.22 PAC:31975591 |
High | No | 3179 | Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -27.317 AMFE: -0.636 GC content %: 42.938 | |
| Taestivum_Traes_7AS_F69BFB93E.23 Traes_7AS_F69BFB93E.23 PAC:31975589 |
High | No | 2960 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -27.412 AMFE: -0.633 GC content %: 43.311 | |
| Taestivum_Traes_7AS_F69BFB93E.24 Traes_7AS_F69BFB93E.24 PAC:31975594 |
High | No | 3398 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -26.557 AMFE: -0.630 GC content %: 42.142 | |
| Taestivum_Traes_7AS_F69BFB93E.25 Traes_7AS_F69BFB93E.25 PAC:31975602 |
High | No | 2755 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -28.044 AMFE: -0.632 GC content %: 44.356 | |
| Taestivum_Traes_7AS_F69BFB93E.5 Traes_7AS_F69BFB93E.5 PAC:31975581 |
High | No | 2235 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -28.170 AMFE: -0.629 GC content %: 44.787 | |
| Taestivum_Traes_7AS_F69BFB93E.6 Traes_7AS_F69BFB93E.6 PAC:31975584 |
High | No | 2316 | Get ORF Coding potential... Type: noncoding Potential: -0.658 Folding energies... MFEI: -28.528 AMFE: -0.622 GC content %: 45.855 | |
| Taestivum_Traes_7AS_F69BFB93E.7 Traes_7AS_F69BFB93E.7 PAC:31975582 |
High | No | 2712 | Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -27.176 AMFE: -0.629 GC content %: 43.215 | |
| Taestivum_Traes_7AS_F69BFB93E.8 Traes_7AS_F69BFB93E.8 PAC:31975583 |
High | No | 2060 | Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -28.985 AMFE: -0.624 GC content %: 46.456 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
