GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BL_06035D6F4 Traes_7BL_06035D6F4	ta_iwgsc_7bl_v1_2642532	3	461	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BL_06035D6F4.1 Traes_7BL_06035D6F4.1 PAC:31920794	High	No	336		Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -25.893 AMFE: -0.521 GC content %: 49.702
Taestivum_Traes_7BL_06035D6F4.2 Traes_7BL_06035D6F4.2 PAC:31920795	High	No	440		Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -26.295 AMFE: -0.543 GC content %: 48.409

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).