Gene
Taestivum Traes 7BL 3FF5B5972
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7BL_3FF5B5972 Traes_7BL_3FF5B5972 |
ta_iwgsc_7bl_v1_6726956 | 283 | 2697 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7BL_3FF5B5972.1 Traes_7BL_3FF5B5972.1 PAC:31846125 |
High | No | 1862 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -26.235 AMFE: -0.636 GC content %: 41.246 | |
| Taestivum_Traes_7BL_3FF5B5972.3 Traes_7BL_3FF5B5972.3 PAC:31846123 |
High | No | 1901 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -26.376 AMFE: -0.633 GC content %: 41.662 | |
| Taestivum_Traes_7BL_3FF5B5972.4 Traes_7BL_3FF5B5972.4 PAC:31846122 |
High | No | 692 | Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -26.676 AMFE: -0.584 GC content %: 45.665 | |
| Taestivum_Traes_7BL_3FF5B5972.5 Traes_7BL_3FF5B5972.5 PAC:31846124 |
High | No | 650 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -28.108 AMFE: -0.607 GC content %: 46.308 | |
| Taestivum_Traes_7BL_3FF5B5972.6 Traes_7BL_3FF5B5972.6 PAC:31846126 |
High | No | 1646 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -26.713 AMFE: -0.643 GC content %: 41.555 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
