GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BL_5416E1BB1 Traes_7BL_5416E1BB1	ta_iwgsc_7bl_v1_4568410	1388	8075	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BL_5416E1BB1.4 Traes_7BL_5416E1BB1.4 PAC:31953316	High	No	365		Get ORF Coding potential... Type: noncoding Potential: -0.698 Folding energies... MFEI: -27.808 AMFE: -0.638 GC content %: 43.562
Taestivum_Traes_7BL_5416E1BB1.5 Traes_7BL_5416E1BB1.5 PAC:31953317	High	No	1084		Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -24.751 AMFE: -0.650 GC content %: 38.100
Taestivum_Traes_7BL_5416E1BB1.6 Traes_7BL_5416E1BB1.6 PAC:31953319	High	No	646		Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -27.059 AMFE: -0.631 GC content %: 42.879
Taestivum_Traes_7BL_5416E1BB1.7 Traes_7BL_5416E1BB1.7 PAC:31953318	High	No	583		Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -24.151 AMFE: -0.592 GC content %: 40.823

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).