GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BL_5CADD1825 Traes_7BL_5CADD1825	ta_iwgsc_7bl_v1_6587020	256	2331	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BL_5CADD1825.1 Traes_7BL_5CADD1825.1 PAC:31821115	Low	No	702		Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -28.433 AMFE: -0.677 GC content %: 42.023
Taestivum_Traes_7BL_5CADD1825.2 Traes_7BL_5CADD1825.2 PAC:31821116	Low	No	1287		Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -23.776 AMFE: -0.640 GC content %: 37.141

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).