Gene
Taestivum Traes 7BL 5D6B7314D
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7BL_5D6B7314D Traes_7BL_5D6B7314D |
ta_iwgsc_7bl_v1_6667465 | 4 | 2719 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7BL_5D6B7314D.10 Traes_7BL_5D6B7314D.10 PAC:31970748 |
Low | No | 1898 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -28.014 AMFE: -0.642 GC content %: 43.625 | |
| Taestivum_Traes_7BL_5D6B7314D.11 Traes_7BL_5D6B7314D.11 PAC:31970749 |
Low | No | 1530 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -28.967 AMFE: -0.654 GC content %: 44.314 | |
| Taestivum_Traes_7BL_5D6B7314D.12 Traes_7BL_5D6B7314D.12 PAC:31970750 |
Low | No | 1583 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -28.326 AMFE: -0.631 GC content %: 44.915 | |
| Taestivum_Traes_7BL_5D6B7314D.8 Traes_7BL_5D6B7314D.8 PAC:31970746 |
Low | No | 1381 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -28.096 AMFE: -0.630 GC content %: 44.605 | |
| Taestivum_Traes_7BL_5D6B7314D.9 Traes_7BL_5D6B7314D.9 PAC:31970747 |
Low | No | 1366 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -27.921 AMFE: -0.628 GC content %: 44.436 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
