Gene
Taestivum Traes 7BL 5F85DB363
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7BL_5F85DB363 Traes_7BL_5F85DB363 |
ta_iwgsc_7bl_v1_6748971 | 3 | 2716 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7BL_5F85DB363.1 Traes_7BL_5F85DB363.1 PAC:31947187 |
High | No | 1641 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -28.830 AMFE: -0.656 GC content %: 43.937 | |
| Taestivum_Traes_7BL_5F85DB363.10 Traes_7BL_5F85DB363.10 PAC:31947191 |
High | No | 1758 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -29.204 AMFE: -0.668 GC content %: 43.686 | |
| Taestivum_Traes_7BL_5F85DB363.11 Traes_7BL_5F85DB363.11 PAC:31947192 |
High | No | 1328 | Get ORF Coding potential... Type: noncoding Potential: -0.803 Folding energies... MFEI: -30.151 AMFE: -0.660 GC content %: 45.708 | |
| Taestivum_Traes_7BL_5F85DB363.12 Traes_7BL_5F85DB363.12 PAC:31947193 |
High | No | 1514 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -29.762 AMFE: -0.671 GC content %: 44.386 | |
| Taestivum_Traes_7BL_5F85DB363.13 Traes_7BL_5F85DB363.13 PAC:31947194 |
High | No | 1876 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -29.270 AMFE: -0.673 GC content %: 43.497 | |
| Taestivum_Traes_7BL_5F85DB363.16 Traes_7BL_5F85DB363.16 PAC:31947197 |
High | No | 1514 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -29.848 AMFE: -0.672 GC content %: 44.386 | |
| Taestivum_Traes_7BL_5F85DB363.17 Traes_7BL_5F85DB363.17 PAC:31947198 |
High | No | 1535 | Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -29.270 AMFE: -0.660 GC content %: 44.365 | |
| Taestivum_Traes_7BL_5F85DB363.18 Traes_7BL_5F85DB363.18 PAC:31947199 |
High | No | 1434 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -30.195 AMFE: -0.677 GC content %: 44.630 | |
| Taestivum_Traes_7BL_5F85DB363.19 Traes_7BL_5F85DB363.19 PAC:31947200 |
High | No | 1519 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -30.039 AMFE: -0.677 GC content %: 44.371 | |
| Taestivum_Traes_7BL_5F85DB363.20 Traes_7BL_5F85DB363.20 PAC:31947201 |
High | No | 1506 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -29.874 AMFE: -0.672 GC content %: 44.422 | |
| Taestivum_Traes_7BL_5F85DB363.21 Traes_7BL_5F85DB363.21 PAC:31947203 |
High | No | 1529 | Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -29.784 AMFE: -0.676 GC content %: 44.081 | |
| Taestivum_Traes_7BL_5F85DB363.22 Traes_7BL_5F85DB363.22 PAC:31947202 |
High | No | 1523 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -29.823 AMFE: -0.676 GC content %: 44.123 | |
| Taestivum_Traes_7BL_5F85DB363.23 Traes_7BL_5F85DB363.23 PAC:31947207 |
High | No | 1756 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -29.328 AMFE: -0.679 GC content %: 43.166 | |
| Taestivum_Traes_7BL_5F85DB363.24 Traes_7BL_5F85DB363.24 PAC:31947204 |
High | No | 1669 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -29.742 AMFE: -0.686 GC content %: 43.379 | |
| Taestivum_Traes_7BL_5F85DB363.25 Traes_7BL_5F85DB363.25 PAC:31947206 |
High | No | 1753 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -29.287 AMFE: -0.678 GC content %: 43.183 | |
| Taestivum_Traes_7BL_5F85DB363.26 Traes_7BL_5F85DB363.26 PAC:31947205 |
High | No | 1668 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -29.586 AMFE: -0.684 GC content %: 43.285 | |
| Taestivum_Traes_7BL_5F85DB363.27 Traes_7BL_5F85DB363.27 PAC:31947208 |
High | No | 1735 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -29.516 AMFE: -0.679 GC content %: 43.458 | |
| Taestivum_Traes_7BL_5F85DB363.28 Traes_7BL_5F85DB363.28 PAC:31947209 |
High | No | 1336 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -30.674 AMFE: -0.675 GC content %: 45.434 | |
| Taestivum_Traes_7BL_5F85DB363.7 Traes_7BL_5F85DB363.7 PAC:31947188 |
High | No | 2129 | Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -28.351 AMFE: -0.679 GC content %: 41.757 | |
| Taestivum_Traes_7BL_5F85DB363.8 Traes_7BL_5F85DB363.8 PAC:31947190 |
High | No | 1446 | Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -30.207 AMFE: -0.682 GC content %: 44.260 | |
| Taestivum_Traes_7BL_5F85DB363.9 Traes_7BL_5F85DB363.9 PAC:31947189 |
High | No | 1791 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -28.956 AMFE: -0.677 GC content %: 42.769 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
