GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BL_BA0E65E68 Traes_7BL_BA0E65E68	ta_iwgsc_7bl_v1_6750352	2548	2977	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BL_BA0E65E68.1 Traes_7BL_BA0E65E68.1 PAC:31942157	High	No	312		Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -21.122 AMFE: -0.474 GC content %: 44.551
Taestivum_Traes_7BL_BA0E65E68.2 Traes_7BL_BA0E65E68.2 PAC:31942158	Low	No	366		Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -23.934 AMFE: -0.518 GC content %: 46.175

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).