GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BS_173AAFE8D Traes_7BS_173AAFE8D	ta_iwgsc_7bs_v1_3084187	608	1132	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BS_173AAFE8D.2 Traes_7BS_173AAFE8D.2 PAC:31949000	High	No	291		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -30.275 AMFE: -0.599 GC content %: 50.515
Taestivum_Traes_7BS_173AAFE8D.3 Traes_7BS_173AAFE8D.3 PAC:31949001	High	No	285		Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -25.895 AMFE: -0.600 GC content %: 43.158

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).