Gene
Taestivum Traes 7BS 215A09B8C
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7BS_215A09B8C Traes_7BS_215A09B8C |
ta_iwgsc_7bs_v1_3085579 | 2728 | 6000 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7BS_215A09B8C.1 Traes_7BS_215A09B8C.1 PAC:31854650 |
High | No | 2046 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -29.453 AMFE: -0.672 GC content %: 43.842 | |
| Taestivum_Traes_7BS_215A09B8C.10 Traes_7BS_215A09B8C.10 PAC:31854633 |
High | No | 1832 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -28.624 AMFE: -0.655 GC content %: 43.668 | |
| Taestivum_Traes_7BS_215A09B8C.11 Traes_7BS_215A09B8C.11 PAC:31854635 |
High | No | 2284 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -27.999 AMFE: -0.659 GC content %: 42.469 | |
| Taestivum_Traes_7BS_215A09B8C.12 Traes_7BS_215A09B8C.12 PAC:31854636 |
High | No | 1734 | Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -29.954 AMFE: -0.667 GC content %: 44.925 | |
| Taestivum_Traes_7BS_215A09B8C.13 Traes_7BS_215A09B8C.13 PAC:31854637 |
High | No | 1784 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -30.135 AMFE: -0.664 GC content %: 45.404 | |
| Taestivum_Traes_7BS_215A09B8C.14 Traes_7BS_215A09B8C.14 PAC:31854640 |
High | No | 2505 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -27.549 AMFE: -0.660 GC content %: 41.717 | |
| Taestivum_Traes_7BS_215A09B8C.15 Traes_7BS_215A09B8C.15 PAC:31854639 |
High | No | 2470 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -27.587 AMFE: -0.669 GC content %: 41.255 | |
| Taestivum_Traes_7BS_215A09B8C.16 Traes_7BS_215A09B8C.16 PAC:31854643 |
High | No | 1904 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -28.130 AMFE: -0.654 GC content %: 43.015 | |
| Taestivum_Traes_7BS_215A09B8C.17 Traes_7BS_215A09B8C.17 PAC:31854638 |
High | No | 2172 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -27.182 AMFE: -0.652 GC content %: 41.713 | |
| Taestivum_Traes_7BS_215A09B8C.18 Traes_7BS_215A09B8C.18 PAC:31854642 |
High | No | 2080 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -29.120 AMFE: -0.669 GC content %: 43.558 | |
| Taestivum_Traes_7BS_215A09B8C.19 Traes_7BS_215A09B8C.19 PAC:31854641 |
High | No | 2779 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -27.434 AMFE: -0.662 GC content %: 41.418 | |
| Taestivum_Traes_7BS_215A09B8C.2 Traes_7BS_215A09B8C.2 PAC:31854626 |
High | No | 1683 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -32.044 AMFE: -0.661 GC content %: 48.485 | |
| Taestivum_Traes_7BS_215A09B8C.20 Traes_7BS_215A09B8C.20 PAC:31854646 |
High | No | 1772 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -27.669 AMFE: -0.649 GC content %: 42.607 | |
| Taestivum_Traes_7BS_215A09B8C.21 Traes_7BS_215A09B8C.21 PAC:31854645 |
High | No | 2013 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -28.659 AMFE: -0.660 GC content %: 43.418 | |
| Taestivum_Traes_7BS_215A09B8C.22 Traes_7BS_215A09B8C.22 PAC:31854644 |
High | No | 2308 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -28.063 AMFE: -0.652 GC content %: 43.068 | |
| Taestivum_Traes_7BS_215A09B8C.23 Traes_7BS_215A09B8C.23 PAC:31854648 |
High | No | 2111 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -29.327 AMFE: -0.664 GC content %: 44.197 | |
| Taestivum_Traes_7BS_215A09B8C.24 Traes_7BS_215A09B8C.24 PAC:31854647 |
High | No | 1272 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -31.643 AMFE: -0.650 GC content %: 48.664 | |
| Taestivum_Traes_7BS_215A09B8C.25 Traes_7BS_215A09B8C.25 PAC:31854649 |
High | No | 1734 | Get ORF Coding potential... Type: noncoding Potential: -1.331 Folding energies... MFEI: -30.012 AMFE: -0.642 GC content %: 46.713 | |
| Taestivum_Traes_7BS_215A09B8C.26 Traes_7BS_215A09B8C.26 PAC:31854653 |
High | No | 1439 | Get ORF Coding potential... Type: noncoding Potential: -1.378 Folding energies... MFEI: -30.667 AMFE: -0.650 GC content %: 47.186 | |
| Taestivum_Traes_7BS_215A09B8C.27 Traes_7BS_215A09B8C.27 PAC:31854651 |
High | No | 1339 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -30.769 AMFE: -0.660 GC content %: 46.602 | |
| Taestivum_Traes_7BS_215A09B8C.28 Traes_7BS_215A09B8C.28 PAC:31854652 |
High | No | 1915 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -29.854 AMFE: -0.669 GC content %: 44.648 | |
| Taestivum_Traes_7BS_215A09B8C.29 Traes_7BS_215A09B8C.29 PAC:31854654 |
High | No | 1140 | Get ORF Coding potential... Type: noncoding Potential: -1.364 Folding energies... MFEI: -26.325 AMFE: -0.633 GC content %: 41.579 | |
| Taestivum_Traes_7BS_215A09B8C.3 Traes_7BS_215A09B8C.3 PAC:31854631 |
High | No | 2406 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -28.358 AMFE: -0.658 GC content %: 43.101 | |
| Taestivum_Traes_7BS_215A09B8C.30 Traes_7BS_215A09B8C.30 PAC:31854655 |
High | No | 1430 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -30.231 AMFE: -0.650 GC content %: 46.503 | |
| Taestivum_Traes_7BS_215A09B8C.31 Traes_7BS_215A09B8C.31 PAC:31854656 |
High | No | 1466 | Get ORF Coding potential... Type: noncoding Potential: -1.379 Folding energies... MFEI: -30.102 AMFE: -0.647 GC content %: 46.521 | |
| Taestivum_Traes_7BS_215A09B8C.32 Traes_7BS_215A09B8C.32 PAC:31854657 |
High | No | 948 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -26.762 AMFE: -0.659 GC content %: 40.612 | |
| Taestivum_Traes_7BS_215A09B8C.4 Traes_7BS_215A09B8C.4 PAC:31854630 |
High | No | 2778 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -28.697 AMFE: -0.667 GC content %: 43.053 | |
| Taestivum_Traes_7BS_215A09B8C.5 Traes_7BS_215A09B8C.5 PAC:31854627 |
High | No | 1980 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -28.889 AMFE: -0.666 GC content %: 43.384 | |
| Taestivum_Traes_7BS_215A09B8C.6 Traes_7BS_215A09B8C.6 PAC:31854628 |
High | No | 1267 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -31.239 AMFE: -0.641 GC content %: 48.698 | |
| Taestivum_Traes_7BS_215A09B8C.7 Traes_7BS_215A09B8C.7 PAC:31854629 |
High | No | 2111 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -29.072 AMFE: -0.656 GC content %: 44.339 | |
| Taestivum_Traes_7BS_215A09B8C.8 Traes_7BS_215A09B8C.8 PAC:31854632 |
High | No | 2396 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -27.487 AMFE: -0.657 GC content %: 41.861 | |
| Taestivum_Traes_7BS_215A09B8C.9 Traes_7BS_215A09B8C.9 PAC:31854634 |
High | No | 2209 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -28.497 AMFE: -0.669 GC content %: 42.598 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
