GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BS_61D914B121 Traes_7BS_61D914B121	ta_iwgsc_7bs_v1_2410196	1	933	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BS_61D914B121.1 Traes_7BS_61D914B121.1 PAC:31915407	Low	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.305 Folding energies... MFEI: -29.224 AMFE: -0.644 GC content %: 45.395
Taestivum_Traes_7BS_61D914B121.2 Traes_7BS_61D914B121.2 PAC:31915405	Low	No	245		Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -31.837 AMFE: -0.569 GC content %: 55.918
Taestivum_Traes_7BS_61D914B121.3 Traes_7BS_61D914B121.3 PAC:31915406	Low	No	933		Get ORF Coding potential... Type: noncoding Potential: -0.332 Folding energies... MFEI: -29.496 AMFE: -0.665 GC content %: 44.373

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).