GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BS_7603974E2 Traes_7BS_7603974E2	ta_iwgsc_7bs_v1_3097074	5615	6653	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BS_7603974E2.1 Traes_7BS_7603974E2.1 PAC:31849363	Low	No	492		Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -36.301 AMFE: -0.633 GC content %: 57.317
Taestivum_Traes_7BS_7603974E2.2 Traes_7BS_7603974E2.2 PAC:31849365	Low	No	358		Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -35.503 AMFE: -0.586 GC content %: 60.615
Taestivum_Traes_7BS_7603974E2.3 Traes_7BS_7603974E2.3 PAC:31849364	Low	No	352		Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -34.744 AMFE: -0.574 GC content %: 60.511

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).