GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BS_7B02A746A Traes_7BS_7B02A746A	ta_iwgsc_7bs_v1_3113847	2	1138	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BS_7B02A746A.1 Traes_7BS_7B02A746A.1 PAC:31932478	High	No	490		Get ORF Coding potential... Type: noncoding Potential: -0.085 Folding energies... MFEI: -27.388 AMFE: -0.586 GC content %: 46.735
Taestivum_Traes_7BS_7B02A746A.2 Traes_7BS_7B02A746A.2 PAC:31932477	High	No	369		Get ORF Coding potential... Type: noncoding Potential: -0.031 Folding energies... MFEI: -24.743 AMFE: -0.537 GC content %: 46.070

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).