Gene
Taestivum Traes 7BS 8B2D23DD7
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7BS_8B2D23DD7 Traes_7BS_8B2D23DD7 |
ta_iwgsc_7bs_v1_3143221 | 102 | 3136 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7BS_8B2D23DD7.1 Traes_7BS_8B2D23DD7.1 PAC:31965599 |
High | No | 2266 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -26.412 AMFE: -0.663 GC content %: 39.850 | |
| Taestivum_Traes_7BS_8B2D23DD7.2 Traes_7BS_8B2D23DD7.2 PAC:31965596 |
High | No | 1500 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -28.133 AMFE: -0.678 GC content %: 41.467 | |
| Taestivum_Traes_7BS_8B2D23DD7.3 Traes_7BS_8B2D23DD7.3 PAC:31965597 |
High | No | 1401 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -28.565 AMFE: -0.677 GC content %: 42.184 | |
| Taestivum_Traes_7BS_8B2D23DD7.4 Traes_7BS_8B2D23DD7.4 PAC:31965598 |
High | No | 1552 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -28.241 AMFE: -0.675 GC content %: 41.817 | |
| Taestivum_Traes_7BS_8B2D23DD7.5 Traes_7BS_8B2D23DD7.5 PAC:31965600 |
High | No | 988 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -26.437 AMFE: -0.629 GC content %: 42.004 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
