Gene
Taestivum Traes 7BS 97AB520FD
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7BS_97AB520FD Traes_7BS_97AB520FD |
ta_iwgsc_7bs_v1_3102357 | 167 | 5767 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7BS_97AB520FD.1 Traes_7BS_97AB520FD.1 PAC:31955020 |
High | No | 1494 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -29.411 AMFE: -0.670 GC content %: 43.909 | |
| Taestivum_Traes_7BS_97AB520FD.10 Traes_7BS_97AB520FD.10 PAC:31955019 |
High | No | 1478 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -30.291 AMFE: -0.674 GC content %: 44.926 | |
| Taestivum_Traes_7BS_97AB520FD.2 Traes_7BS_97AB520FD.2 PAC:31955017 |
High | No | 1411 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -30.539 AMFE: -0.676 GC content %: 45.145 | |
| Taestivum_Traes_7BS_97AB520FD.3 Traes_7BS_97AB520FD.3 PAC:31955024 |
High | No | 1547 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -29.276 AMFE: -0.660 GC content %: 44.344 | |
| Taestivum_Traes_7BS_97AB520FD.4 Traes_7BS_97AB520FD.4 PAC:31955023 |
High | No | 1312 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -29.931 AMFE: -0.664 GC content %: 45.046 | |
| Taestivum_Traes_7BS_97AB520FD.5 Traes_7BS_97AB520FD.5 PAC:31955021 |
Low | No | 1916 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -29.228 AMFE: -0.680 GC content %: 43.006 | |
| Taestivum_Traes_7BS_97AB520FD.6 Traes_7BS_97AB520FD.6 PAC:31955018 |
High | No | 1483 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -29.670 AMFE: -0.662 GC content %: 44.842 | |
| Taestivum_Traes_7BS_97AB520FD.7 Traes_7BS_97AB520FD.7 PAC:31955026 |
High | No | 1523 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -29.186 AMFE: -0.655 GC content %: 44.583 | |
| Taestivum_Traes_7BS_97AB520FD.8 Traes_7BS_97AB520FD.8 PAC:31955022 |
High | No | 1487 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -30.350 AMFE: -0.676 GC content %: 44.923 | |
| Taestivum_Traes_7BS_97AB520FD.9 Traes_7BS_97AB520FD.9 PAC:31955025 |
High | No | 1538 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -29.896 AMFE: -0.672 GC content %: 44.473 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
