GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BS_A29FA292F Traes_7BS_A29FA292F	ta_iwgsc_7bs_v1_3165007	5211	7091	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BS_A29FA292F.1 Traes_7BS_A29FA292F.1 PAC:31794502	High	No	640		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -24.609 AMFE: -0.495 GC content %: 49.688
Taestivum_Traes_7BS_A29FA292F.2 Traes_7BS_A29FA292F.2 PAC:31794501	High	No	540		Get ORF Coding potential... Type: noncoding Potential: -1.321 Folding energies... MFEI: -24.000 AMFE: -0.473 GC content %: 50.741
Taestivum_Traes_7BS_A29FA292F.3 Traes_7BS_A29FA292F.3 PAC:31794503	High	No	591		Get ORF Coding potential... Type: noncoding Potential: -1.330 Folding energies... MFEI: -24.822 AMFE: -0.492 GC content %: 50.423

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).