GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BS_B7FBCA94B Traes_7BS_B7FBCA94B	ta_iwgsc_7bs_v1_3164897	1	8120	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BS_B7FBCA94B.1 Traes_7BS_B7FBCA94B.1 PAC:31956039	High	No	219		Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -36.758 AMFE: -0.624 GC content %: 58.904
Taestivum_Traes_7BS_B7FBCA94B.2 Traes_7BS_B7FBCA94B.2 PAC:31956038	High	No	347		Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -34.438 AMFE: -0.664 GC content %: 51.873
Taestivum_Traes_7BS_B7FBCA94B.3 Traes_7BS_B7FBCA94B.3 PAC:31956040	High	No	415		Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -18.699 AMFE: -0.514 GC content %: 36.386

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).