GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BS_C225A7BA3 Traes_7BS_C225A7BA3	ta_iwgsc_7bs_v1_3161543	2938	4551	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BS_C225A7BA3.1 Traes_7BS_C225A7BA3.1 PAC:31786632	Low	No	615		Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -32.927 AMFE: -0.587 GC content %: 56.098
Taestivum_Traes_7BS_C225A7BA3.2 Traes_7BS_C225A7BA3.2 PAC:31786631	Low	No	629		Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -32.432 AMFE: -0.580 GC content %: 55.962

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).