Gene
Taestivum Traes 7BS DCED460C4
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7BS_DCED460C4 Traes_7BS_DCED460C4 |
ta_iwgsc_7bs_v1_3154146 | 3736 | 6233 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7BS_DCED460C4.1 Traes_7BS_DCED460C4.1 PAC:31972871 |
High | No | 539 | Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -26.939 AMFE: -0.598 GC content %: 45.083 | |
| Taestivum_Traes_7BS_DCED460C4.10 Traes_7BS_DCED460C4.10 PAC:31972880 |
High | No | 721 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -27.476 AMFE: -0.623 GC content %: 44.105 | |
| Taestivum_Traes_7BS_DCED460C4.11 Traes_7BS_DCED460C4.11 PAC:31972882 |
High | No | 1008 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -26.696 AMFE: -0.660 GC content %: 40.476 | |
| Taestivum_Traes_7BS_DCED460C4.12 Traes_7BS_DCED460C4.12 PAC:31972874 |
High | No | 2412 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -24.378 AMFE: -0.606 GC content %: 40.216 | |
| Taestivum_Traes_7BS_DCED460C4.2 Traes_7BS_DCED460C4.2 PAC:31972873 |
High | No | 696 | Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -25.489 AMFE: -0.582 GC content %: 43.822 | |
| Taestivum_Traes_7BS_DCED460C4.3 Traes_7BS_DCED460C4.3 PAC:31972872 |
High | No | 1164 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -25.395 AMFE: -0.603 GC content %: 42.096 | |
| Taestivum_Traes_7BS_DCED460C4.4 Traes_7BS_DCED460C4.4 PAC:31972875 |
High | No | 1538 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -26.638 AMFE: -0.646 GC content %: 41.222 | |
| Taestivum_Traes_7BS_DCED460C4.5 Traes_7BS_DCED460C4.5 PAC:31972876 |
High | No | 761 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -27.411 AMFE: -0.614 GC content %: 44.678 | |
| Taestivum_Traes_7BS_DCED460C4.6 Traes_7BS_DCED460C4.6 PAC:31972877 |
High | No | 1885 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -25.077 AMFE: -0.615 GC content %: 40.743 | |
| Taestivum_Traes_7BS_DCED460C4.7 Traes_7BS_DCED460C4.7 PAC:31972878 |
High | No | 2322 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -25.336 AMFE: -0.625 GC content %: 40.525 | |
| Taestivum_Traes_7BS_DCED460C4.8 Traes_7BS_DCED460C4.8 PAC:31972879 |
High | No | 1952 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -25.839 AMFE: -0.627 GC content %: 41.240 | |
| Taestivum_Traes_7BS_DCED460C4.9 Traes_7BS_DCED460C4.9 PAC:31972881 |
High | No | 1260 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -24.524 AMFE: -0.595 GC content %: 41.190 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
