GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BS_DEE3B21E5 Traes_7BS_DEE3B21E5	ta_iwgsc_7bs_v1_3132615	321	2035	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BS_DEE3B21E5.1 Traes_7BS_DEE3B21E5.1 PAC:31801742	Low	No	618		Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -30.340 AMFE: -0.605 GC content %: 50.162
Taestivum_Traes_7BS_DEE3B21E5.2 Traes_7BS_DEE3B21E5.2 PAC:31801743	Low	No	523		Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -30.516 AMFE: -0.602 GC content %: 50.669

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).