GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7BS_F1F90C3D4 Traes_7BS_F1F90C3D4	ta_iwgsc_7bs_v1_3147706	626	1687	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7BS_F1F90C3D4.1 Traes_7BS_F1F90C3D4.1 PAC:31868099	Low	No	596		Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -24.581 AMFE: -0.613 GC content %: 40.101
Taestivum_Traes_7BS_F1F90C3D4.2 Traes_7BS_F1F90C3D4.2 PAC:31868100	High	No	595		Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -23.630 AMFE: -0.609 GC content %: 38.824

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).