Gene
Taestivum Traes 7BS FAA8243CB
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7BS_FAA8243CB Traes_7BS_FAA8243CB |
ta_iwgsc_7bs_v1_3074655 | 17875 | 23194 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7BS_FAA8243CB.1 Traes_7BS_FAA8243CB.1 PAC:32019629 |
High | No | 3775 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -28.826 AMFE: -0.675 GC content %: 42.702 | |
| Taestivum_Traes_7BS_FAA8243CB.10 Traes_7BS_FAA8243CB.10 PAC:32019631 |
High | No | 2884 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -30.357 AMFE: -0.680 GC content %: 44.626 | |
| Taestivum_Traes_7BS_FAA8243CB.11 Traes_7BS_FAA8243CB.11 PAC:32019632 |
High | No | 3412 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -29.341 AMFE: -0.684 GC content %: 42.907 | |
| Taestivum_Traes_7BS_FAA8243CB.12 Traes_7BS_FAA8243CB.12 PAC:32019633 |
High | No | 3104 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -30.245 AMFE: -0.669 GC content %: 45.232 | |
| Taestivum_Traes_7BS_FAA8243CB.13 Traes_7BS_FAA8243CB.13 PAC:32019635 |
High | No | 3079 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -29.766 AMFE: -0.685 GC content %: 43.456 | |
| Taestivum_Traes_7BS_FAA8243CB.14 Traes_7BS_FAA8243CB.14 PAC:32019634 |
High | No | 2644 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -30.579 AMFE: -0.679 GC content %: 45.045 | |
| Taestivum_Traes_7BS_FAA8243CB.15 Traes_7BS_FAA8243CB.15 PAC:32019636 |
High | No | 3014 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -30.601 AMFE: -0.673 GC content %: 45.455 | |
| Taestivum_Traes_7BS_FAA8243CB.16 Traes_7BS_FAA8243CB.16 PAC:32019637 |
High | No | 2646 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -30.926 AMFE: -0.675 GC content %: 45.805 | |
| Taestivum_Traes_7BS_FAA8243CB.17 Traes_7BS_FAA8243CB.17 PAC:32019638 |
High | No | 2946 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -30.265 AMFE: -0.667 GC content %: 45.350 | |
| Taestivum_Traes_7BS_FAA8243CB.18 Traes_7BS_FAA8243CB.18 PAC:32019641 |
High | No | 4114 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -28.799 AMFE: -0.677 GC content %: 42.538 | |
| Taestivum_Traes_7BS_FAA8243CB.19 Traes_7BS_FAA8243CB.19 PAC:32019640 |
High | No | 3771 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -29.711 AMFE: -0.684 GC content %: 43.410 | |
| Taestivum_Traes_7BS_FAA8243CB.2 Traes_7BS_FAA8243CB.2 PAC:32019622 |
High | No | 3447 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -29.925 AMFE: -0.682 GC content %: 43.893 | |
| Taestivum_Traes_7BS_FAA8243CB.20 Traes_7BS_FAA8243CB.20 PAC:32019639 |
High | No | 3732 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -29.448 AMFE: -0.679 GC content %: 43.382 | |
| Taestivum_Traes_7BS_FAA8243CB.21 Traes_7BS_FAA8243CB.21 PAC:32019642 |
High | No | 2636 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -31.271 AMFE: -0.675 GC content %: 46.358 | |
| Taestivum_Traes_7BS_FAA8243CB.22 Traes_7BS_FAA8243CB.22 PAC:32019643 |
High | No | 2993 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -30.221 AMFE: -0.670 GC content %: 45.072 | |
| Taestivum_Traes_7BS_FAA8243CB.23 Traes_7BS_FAA8243CB.23 PAC:32019644 |
High | No | 2982 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -30.845 AMFE: -0.682 GC content %: 45.205 | |
| Taestivum_Traes_7BS_FAA8243CB.24 Traes_7BS_FAA8243CB.24 PAC:32019649 |
High | No | 3903 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -29.833 AMFE: -0.683 GC content %: 43.684 | |
| Taestivum_Traes_7BS_FAA8243CB.25 Traes_7BS_FAA8243CB.25 PAC:32019645 |
High | No | 3480 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -29.598 AMFE: -0.683 GC content %: 43.305 | |
| Taestivum_Traes_7BS_FAA8243CB.26 Traes_7BS_FAA8243CB.26 PAC:32019648 |
High | No | 3951 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -29.053 AMFE: -0.682 GC content %: 42.622 | |
| Taestivum_Traes_7BS_FAA8243CB.27 Traes_7BS_FAA8243CB.27 PAC:32019647 |
High | No | 3836 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -28.921 AMFE: -0.684 GC content %: 42.258 | |
| Taestivum_Traes_7BS_FAA8243CB.28 Traes_7BS_FAA8243CB.28 PAC:32019650 |
High | No | 3177 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -26.733 AMFE: -0.674 GC content %: 39.660 | |
| Taestivum_Traes_7BS_FAA8243CB.29 Traes_7BS_FAA8243CB.29 PAC:32019646 |
High | No | 3998 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -28.897 AMFE: -0.674 GC content %: 42.896 | |
| Taestivum_Traes_7BS_FAA8243CB.3 Traes_7BS_FAA8243CB.3 PAC:32019623 |
High | No | 3642 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -29.492 AMFE: -0.680 GC content %: 43.383 | |
| Taestivum_Traes_7BS_FAA8243CB.30 Traes_7BS_FAA8243CB.30 PAC:32019653 |
High | No | 3131 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -30.281 AMFE: -0.683 GC content %: 44.331 | |
| Taestivum_Traes_7BS_FAA8243CB.31 Traes_7BS_FAA8243CB.31 PAC:32019651 |
High | No | 3012 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -30.478 AMFE: -0.678 GC content %: 44.954 | |
| Taestivum_Traes_7BS_FAA8243CB.32 Traes_7BS_FAA8243CB.32 PAC:32019652 |
High | No | 3137 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -30.312 AMFE: -0.691 GC content %: 43.864 | |
| Taestivum_Traes_7BS_FAA8243CB.33 Traes_7BS_FAA8243CB.33 PAC:32019655 |
High | No | 3843 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -28.967 AMFE: -0.682 GC content %: 42.467 | |
| Taestivum_Traes_7BS_FAA8243CB.34 Traes_7BS_FAA8243CB.34 PAC:32019654 |
High | No | 3014 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -29.887 AMFE: -0.677 GC content %: 44.161 | |
| Taestivum_Traes_7BS_FAA8243CB.35 Traes_7BS_FAA8243CB.35 PAC:32019656 |
High | No | 3959 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -28.909 AMFE: -0.687 GC content %: 42.107 | |
| Taestivum_Traes_7BS_FAA8243CB.36 Traes_7BS_FAA8243CB.36 PAC:32019657 |
High | No | 3125 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -30.282 AMFE: -0.675 GC content %: 44.864 | |
| Taestivum_Traes_7BS_FAA8243CB.37 Traes_7BS_FAA8243CB.37 PAC:32019658 |
High | No | 2625 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -31.352 AMFE: -0.673 GC content %: 46.552 | |
| Taestivum_Traes_7BS_FAA8243CB.38 Traes_7BS_FAA8243CB.38 PAC:32019660 |
High | No | 3062 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -30.023 AMFE: -0.672 GC content %: 44.677 | |
| Taestivum_Traes_7BS_FAA8243CB.39 Traes_7BS_FAA8243CB.39 PAC:32019661 |
High | No | 3144 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -29.866 AMFE: -0.682 GC content %: 43.798 | |
| Taestivum_Traes_7BS_FAA8243CB.4 Traes_7BS_FAA8243CB.4 PAC:32019624 |
High | No | 3958 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -28.742 AMFE: -0.672 GC content %: 42.799 | |
| Taestivum_Traes_7BS_FAA8243CB.40 Traes_7BS_FAA8243CB.40 PAC:32019659 |
High | No | 2674 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -30.733 AMFE: -0.677 GC content %: 45.363 | |
| Taestivum_Traes_7BS_FAA8243CB.41 Traes_7BS_FAA8243CB.41 PAC:32019662 |
High | No | 3504 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -29.189 AMFE: -0.677 GC content %: 43.094 | |
| Taestivum_Traes_7BS_FAA8243CB.42 Traes_7BS_FAA8243CB.42 PAC:32019663 |
High | No | 2984 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -30.221 AMFE: -0.688 GC content %: 43.901 | |
| Taestivum_Traes_7BS_FAA8243CB.43 Traes_7BS_FAA8243CB.43 PAC:32019664 |
High | No | 2454 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -31.390 AMFE: -0.680 GC content %: 46.170 | |
| Taestivum_Traes_7BS_FAA8243CB.44 Traes_7BS_FAA8243CB.44 PAC:32019665 |
High | No | 1873 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -28.863 AMFE: -0.693 GC content %: 41.644 | |
| Taestivum_Traes_7BS_FAA8243CB.5 Traes_7BS_FAA8243CB.5 PAC:32019625 |
High | No | 2643 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -30.855 AMFE: -0.676 GC content %: 45.668 | |
| Taestivum_Traes_7BS_FAA8243CB.6 Traes_7BS_FAA8243CB.6 PAC:32019626 |
High | No | 3474 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -29.491 AMFE: -0.676 GC content %: 43.638 | |
| Taestivum_Traes_7BS_FAA8243CB.7 Traes_7BS_FAA8243CB.7 PAC:32019627 |
High | No | 3170 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -29.918 AMFE: -0.681 GC content %: 43.943 | |
| Taestivum_Traes_7BS_FAA8243CB.8 Traes_7BS_FAA8243CB.8 PAC:32019628 |
High | No | 3112 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -29.740 AMFE: -0.680 GC content %: 43.766 | |
| Taestivum_Traes_7BS_FAA8243CB.9 Traes_7BS_FAA8243CB.9 PAC:32019630 |
High | No | 3883 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -28.939 AMFE: -0.677 GC content %: 42.725 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
