Gene
Taestivum Traes 7DL 1DC1D315A
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DL_1DC1D315A Traes_7DL_1DC1D315A |
ta_iwgsc_7dl_v1_3391862 | 2 | 5855 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DL_1DC1D315A.10 Traes_7DL_1DC1D315A.10 PAC:31773171 |
High | No | 1218 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -27.865 AMFE: -0.649 GC content %: 42.939 | |
| Taestivum_Traes_7DL_1DC1D315A.11 Traes_7DL_1DC1D315A.11 PAC:31773172 |
Low | No | 1416 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -26.151 AMFE: -0.606 GC content %: 43.150 | |
| Taestivum_Traes_7DL_1DC1D315A.12 Traes_7DL_1DC1D315A.12 PAC:31773170 |
Low | No | 975 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -27.456 AMFE: -0.639 GC content %: 42.974 | |
| Taestivum_Traes_7DL_1DC1D315A.5 Traes_7DL_1DC1D315A.5 PAC:31773165 |
Low | No | 1533 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -27.358 AMFE: -0.648 GC content %: 42.205 | |
| Taestivum_Traes_7DL_1DC1D315A.6 Traes_7DL_1DC1D315A.6 PAC:31773166 |
High | No | 823 | Get ORF Coding potential... Type: noncoding Potential: -1.379 Folding energies... MFEI: -22.382 AMFE: -0.624 GC content %: 35.844 | |
| Taestivum_Traes_7DL_1DC1D315A.7 Traes_7DL_1DC1D315A.7 PAC:31773167 |
High | No | 1254 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -27.496 AMFE: -0.652 GC content %: 42.185 | |
| Taestivum_Traes_7DL_1DC1D315A.8 Traes_7DL_1DC1D315A.8 PAC:31773169 |
Low | No | 1008 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -28.760 AMFE: -0.653 GC content %: 44.048 | |
| Taestivum_Traes_7DL_1DC1D315A.9 Traes_7DL_1DC1D315A.9 PAC:31773168 |
Low | No | 1459 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -25.908 AMFE: -0.611 GC content %: 42.426 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_7DL_1DC1D315A.11 | RepBase (RepeatMasker) | 2014-01-31 | Copia-31_Pru-LTR | |
| Taestivum_Traes_7DL_1DC1D315A.9 | RepBase (RepeatMasker) | 2014-01-31 | Copia-31_Pru-LTR |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
