GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DL_2502F6994 Traes_7DL_2502F6994	ta_iwgsc_7dl_v1_3364977	1688	5237	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DL_2502F6994.5 Traes_7DL_2502F6994.5 PAC:31860705	Low	No	1429		Get ORF Coding potential... Type: coding Potential: 1.341 Folding energies... MFEI: -25.738 AMFE: -0.588 GC content %: 43.807
Taestivum_Traes_7DL_2502F6994.8 Traes_7DL_2502F6994.8 PAC:31860706	Low	No	1594		Get ORF Coding potential... Type: coding Potential: 1.346 Folding energies... MFEI: -26.738 AMFE: -0.611 GC content %: 43.789

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).