Gene
Taestivum Traes 7DL 26288717D
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DL_26288717D Traes_7DL_26288717D |
ta_iwgsc_7dl_v1_3378999 | 2105 | 4349 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DL_26288717D.4 Traes_7DL_26288717D.4 PAC:31786626 |
High | No | 1630 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -23.153 AMFE: -0.587 GC content %: 39.448 | |
| Taestivum_Traes_7DL_26288717D.5 Traes_7DL_26288717D.5 PAC:31786627 |
High | No | 1493 | Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -23.530 AMFE: -0.576 GC content %: 40.857 | |
| Taestivum_Traes_7DL_26288717D.6 Traes_7DL_26288717D.6 PAC:31786628 |
High | No | 960 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -24.844 AMFE: -0.548 GC content %: 45.312 | |
| Taestivum_Traes_7DL_26288717D.7 Traes_7DL_26288717D.7 PAC:31786629 |
High | No | 344 | Get ORF Coding potential... Type: noncoding Potential: -1.408 Folding energies... MFEI: -18.866 AMFE: -0.457 GC content %: 41.279 | |
| Taestivum_Traes_7DL_26288717D.8 Traes_7DL_26288717D.8 PAC:31786630 |
High | No | 212 | Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -17.925 AMFE: -0.447 GC content %: 40.094 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
