GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DL_2C4DB3FD2 Traes_7DL_2C4DB3FD2	ta_iwgsc_7dl_v1_3356340	34981	35617	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DL_2C4DB3FD2.1 Traes_7DL_2C4DB3FD2.1 PAC:31796734	Low	No	596		Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -44.077 AMFE: -0.649 GC content %: 67.953
Taestivum_Traes_7DL_2C4DB3FD2.2 Traes_7DL_2C4DB3FD2.2 PAC:31796735	Low	No	379		Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -52.639 AMFE: -0.710 GC content %: 74.142

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).