Gene

Taestivum Traes 7DL 2F59711E6

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Taestivum_Traes_7DL_2F59711E6
Traes_7DL_2F59711E6
ta_iwgsc_7dl_v1_3373999 2474 5295 Phytozome v2.2 Triticum_aestivum
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Taestivum_Traes_7DL_2F59711E6.10
Traes_7DL_2F59711E6.10
PAC:31824220
Low No 1329
Coding potential...
Type: noncoding Potential: -0.818
Folding energies...
MFEI: -31.129 AMFE: -0.672
GC content
%: 46.351
Taestivum_Traes_7DL_2F59711E6.11
Traes_7DL_2F59711E6.11
PAC:31824221
Low No 933
Coding potential...
Type: noncoding Potential: -0.827
Folding energies...
MFEI: -28.039 AMFE: -0.662
GC content
%: 42.337


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Traes_7DL_2F59711E6.png