GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DL_2F59711E6 Traes_7DL_2F59711E6	ta_iwgsc_7dl_v1_3373999	2474	5295	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DL_2F59711E6.10 Traes_7DL_2F59711E6.10 PAC:31824220	Low	No	1329		Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -31.129 AMFE: -0.672 GC content %: 46.351
Taestivum_Traes_7DL_2F59711E6.11 Traes_7DL_2F59711E6.11 PAC:31824221	Low	No	933		Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -28.039 AMFE: -0.662 GC content %: 42.337

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).