Gene
Taestivum Traes 7DL 30D9D1D93
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DL_30D9D1D93 Traes_7DL_30D9D1D93 |
ta_iwgsc_7dl_v1_3383102 | 1 | 3604 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DL_30D9D1D93.18 Traes_7DL_30D9D1D93.18 PAC:31934125 |
High | No | 1597 | Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -32.423 AMFE: -0.682 GC content %: 47.527 | |
| Taestivum_Traes_7DL_30D9D1D93.19 Traes_7DL_30D9D1D93.19 PAC:31934126 |
High | No | 1697 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -31.809 AMFE: -0.676 GC content %: 47.083 | |
| Taestivum_Traes_7DL_30D9D1D93.20 Traes_7DL_30D9D1D93.20 PAC:31934129 |
Low | Yes | 1534 | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -33.201 AMFE: -0.691 GC content %: 48.044 | |
| Taestivum_Traes_7DL_30D9D1D93.21 Traes_7DL_30D9D1D93.21 PAC:31934128 |
High | No | 1895 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -30.665 AMFE: -0.676 GC content %: 45.383 | |
| Taestivum_Traes_7DL_30D9D1D93.22 Traes_7DL_30D9D1D93.22 PAC:31934127 |
High | No | 998 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -30.731 AMFE: -0.658 GC content %: 46.693 | |
| Taestivum_Traes_7DL_30D9D1D93.23 Traes_7DL_30D9D1D93.23 PAC:31934130 |
High | No | 1571 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -32.304 AMFE: -0.679 GC content %: 47.549 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
