Gene
Taestivum Traes 7DL 4CE2DE5EB
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DL_4CE2DE5EB Traes_7DL_4CE2DE5EB |
ta_iwgsc_7dl_v1_3315530 | 6 | 10147 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DL_4CE2DE5EB.1 Traes_7DL_4CE2DE5EB.1 PAC:31793981 |
High | No | 1015 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -29.990 AMFE: -0.578 GC content %: 51.921 | |
| Taestivum_Traes_7DL_4CE2DE5EB.2 Traes_7DL_4CE2DE5EB.2 PAC:31793976 |
High | No | 1021 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -30.196 AMFE: -0.581 GC content %: 52.008 | |
| Taestivum_Traes_7DL_4CE2DE5EB.3 Traes_7DL_4CE2DE5EB.3 PAC:31793975 |
High | No | 1204 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -29.601 AMFE: -0.580 GC content %: 50.997 | |
| Taestivum_Traes_7DL_4CE2DE5EB.4 Traes_7DL_4CE2DE5EB.4 PAC:31793974 |
High | No | 2628 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -25.190 AMFE: -0.582 GC content %: 43.303 | |
| Taestivum_Traes_7DL_4CE2DE5EB.5 Traes_7DL_4CE2DE5EB.5 PAC:31793977 |
High | No | 968 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -30.455 AMFE: -0.591 GC content %: 51.550 | |
| Taestivum_Traes_7DL_4CE2DE5EB.6 Traes_7DL_4CE2DE5EB.6 PAC:31793978 |
High | No | 315 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -40.952 AMFE: -0.642 GC content %: 63.810 | |
| Taestivum_Traes_7DL_4CE2DE5EB.7 Traes_7DL_4CE2DE5EB.7 PAC:31793979 |
High | No | 1143 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -29.729 AMFE: -0.588 GC content %: 50.569 | |
| Taestivum_Traes_7DL_4CE2DE5EB.8 Traes_7DL_4CE2DE5EB.8 PAC:31793980 |
High | No | 2578 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -25.299 AMFE: -0.588 GC content %: 43.057 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
