Gene
Taestivum Traes 7DL 8650816CA
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DL_8650816CA Traes_7DL_8650816CA |
ta_iwgsc_7dl_v1_3335356 | 393 | 10999 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DL_8650816CA.10 Traes_7DL_8650816CA.10 PAC:31772985 |
High | No | 823 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -32.187 AMFE: -0.617 GC content %: 52.126 | |
| Taestivum_Traes_7DL_8650816CA.11 Traes_7DL_8650816CA.11 PAC:31772986 |
High | No | 1229 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -21.684 AMFE: -0.544 GC content %: 39.870 | |
| Taestivum_Traes_7DL_8650816CA.12 Traes_7DL_8650816CA.12 PAC:31772988 |
High | No | 1237 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -21.196 AMFE: -0.534 GC content %: 39.693 | |
| Taestivum_Traes_7DL_8650816CA.13 Traes_7DL_8650816CA.13 PAC:31772987 |
High | No | 657 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -21.263 AMFE: -0.589 GC content %: 36.073 | |
| Taestivum_Traes_7DL_8650816CA.14 Traes_7DL_8650816CA.14 PAC:31772989 |
High | No | 975 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -29.200 AMFE: -0.588 GC content %: 49.641 | |
| Taestivum_Traes_7DL_8650816CA.3 Traes_7DL_8650816CA.3 PAC:31772978 |
Low | Yes | 2736 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -25.673 AMFE: -0.622 GC content %: 41.265 | |
| Taestivum_Traes_7DL_8650816CA.4 Traes_7DL_8650816CA.4 PAC:31772979 |
Low | Yes | 2829 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -25.239 AMFE: -0.610 GC content %: 41.393 | |
| Taestivum_Traes_7DL_8650816CA.5 Traes_7DL_8650816CA.5 PAC:31772981 |
Low | No | 2639 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -24.445 AMFE: -0.591 GC content %: 41.379 | |
| Taestivum_Traes_7DL_8650816CA.6 Traes_7DL_8650816CA.6 PAC:31772982 |
Low | Yes | 2781 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -25.343 AMFE: -0.621 GC content %: 40.813 | |
| Taestivum_Traes_7DL_8650816CA.7 Traes_7DL_8650816CA.7 PAC:31772980 |
Low | Yes | 2874 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -25.505 AMFE: -0.614 GC content %: 41.545 | |
| Taestivum_Traes_7DL_8650816CA.8 Traes_7DL_8650816CA.8 PAC:31772983 |
High | No | 987 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -19.585 AMFE: -0.549 GC content %: 35.664 | |
| Taestivum_Traes_7DL_8650816CA.9 Traes_7DL_8650816CA.9 PAC:31772984 |
High | No | 933 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -28.757 AMFE: -0.603 GC content %: 47.696 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_7DL_8650816CA.6 | RepBase (RepeatMasker) | 2014-01-31 | HARB-6_SBi | |
| Taestivum_Traes_7DL_8650816CA.6 | Rfam | 11.0 | MIR1122 | 1.4e-11 |
| Taestivum_Traes_7DL_8650816CA.7 | RepBase (RepeatMasker) | 2014-01-31 | HARB-6_SBi | |
| Taestivum_Traes_7DL_8650816CA.7 | Rfam | 11.0 | MIR1122 | 1.5e-11 |
| Taestivum_Traes_7DL_8650816CA.3 | RepBase (RepeatMasker) | 2014-01-31 | HARB-6_SBi | |
| Taestivum_Traes_7DL_8650816CA.4 | RepBase (RepeatMasker) | 2014-01-31 | HARB-6_SBi | |
| Taestivum_Traes_7DL_8650816CA.3 | Rfam | 11.0 | MIR1122 | 1.4e-11 |
| Taestivum_Traes_7DL_8650816CA.5 | RepBase (RepeatMasker) | 2014-01-31 | HARB-6_SBi | |
| Taestivum_Traes_7DL_8650816CA.4 | Rfam | 11.0 | MIR1122 | 1.5e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
