GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DL_8E0F29CAE Traes_7DL_8E0F29CAE	ta_iwgsc_7dl_v1_1903354	5271	7719	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DL_8E0F29CAE.2 Traes_7DL_8E0F29CAE.2 PAC:31940491	Low	Yes	853		Get ORF Coding potential... Type: noncoding Potential: -0.166 Folding energies... MFEI: -37.280 AMFE: -0.711 GC content %: 52.403
Taestivum_Traes_7DL_8E0F29CAE.3 Traes_7DL_8E0F29CAE.3 PAC:31940492	High	No	588		Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -36.939 AMFE: -0.683 GC content %: 54.082

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).