GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DL_9AA490094 Traes_7DL_9AA490094	ta_iwgsc_7dl_v1_2062503	23	3750	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DL_9AA490094.1 Traes_7DL_9AA490094.1 PAC:32018619	High	No	824		Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -25.333 AMFE: -0.612 GC content %: 41.383
Taestivum_Traes_7DL_9AA490094.2 Traes_7DL_9AA490094.2 PAC:32018618	High	No	1664		Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -23.726 AMFE: -0.581 GC content %: 40.865
Taestivum_Traes_7DL_9AA490094.3 Traes_7DL_9AA490094.3 PAC:32018620	High	No	1793		Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -23.714 AMFE: -0.586 GC content %: 40.491

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).