GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DL_AF8F31A6B1 Traes_7DL_AF8F31A6B1	ta_iwgsc_7dl_v1_3319243	12173	13021	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DL_AF8F31A6B1.1 Traes_7DL_AF8F31A6B1.1 PAC:31871994	High	No	849		Get ORF Coding potential... Type: noncoding Potential: -0.427 Folding energies... MFEI: -38.716 AMFE: -0.689 GC content %: 56.184
Taestivum_Traes_7DL_AF8F31A6B1.2 Traes_7DL_AF8F31A6B1.2 PAC:31871993	Low	Yes	504		Get ORF Coding potential... Type: noncoding Potential: -0.453 Folding energies... MFEI: -48.948 AMFE: -0.709 GC content %: 69.048

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).