GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DL_C351A98B2 Traes_7DL_C351A98B2	ta_iwgsc_7dl_v1_3389227	26794	28079	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DL_C351A98B2.2 Traes_7DL_C351A98B2.2 PAC:31851787	Low	No	538		Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -41.097 AMFE: -0.648 GC content %: 63.383
Taestivum_Traes_7DL_C351A98B2.3 Traes_7DL_C351A98B2.3 PAC:31851788	High	No	647		Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -29.459 AMFE: -0.562 GC content %: 52.396

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).