GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DL_D99F89DEC Traes_7DL_D99F89DEC	ta_iwgsc_7dl_v1_3377869	6403	13199	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DL_D99F89DEC.30 Traes_7DL_D99F89DEC.30 PAC:31905801	Low	No	1132		Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -27.694 AMFE: -0.641 GC content %: 43.198
Taestivum_Traes_7DL_D99F89DEC.31 Traes_7DL_D99F89DEC.31 PAC:31905798	Low	No	1288		Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -27.733 AMFE: -0.636 GC content %: 43.634
Taestivum_Traes_7DL_D99F89DEC.32 Traes_7DL_D99F89DEC.32 PAC:31905800	Low	No	1242		Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -28.655 AMFE: -0.644 GC content %: 44.525
Taestivum_Traes_7DL_D99F89DEC.33 Traes_7DL_D99F89DEC.33 PAC:31905799	Low	No	1064		Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -29.906 AMFE: -0.656 GC content %: 45.583

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).