Gene
Taestivum Traes 7DL DA39C2B53
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7DL_DA39C2B53 Traes_7DL_DA39C2B53 |
ta_iwgsc_7dl_v1_3374499 | 9372 | 13411 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7DL_DA39C2B53.1 Traes_7DL_DA39C2B53.1 PAC:31826235 |
High | No | 1668 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -25.522 AMFE: -0.676 GC content %: 37.770 | |
| Taestivum_Traes_7DL_DA39C2B53.2 Traes_7DL_DA39C2B53.2 PAC:31826234 |
High | No | 3237 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -25.307 AMFE: -0.677 GC content %: 37.380 | |
| Taestivum_Traes_7DL_DA39C2B53.3 Traes_7DL_DA39C2B53.3 PAC:31826236 |
High | No | 3617 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -25.292 AMFE: -0.683 GC content %: 37.047 | |
| Taestivum_Traes_7DL_DA39C2B53.4 Traes_7DL_DA39C2B53.4 PAC:31826237 |
High | No | 2996 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -25.290 AMFE: -0.680 GC content %: 37.183 | |
| Taestivum_Traes_7DL_DA39C2B53.5 Traes_7DL_DA39C2B53.5 PAC:31826238 |
High | No | 2636 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -27.007 AMFE: -0.687 GC content %: 39.302 | |
| Taestivum_Traes_7DL_DA39C2B53.6 Traes_7DL_DA39C2B53.6 PAC:31826239 |
High | No | 784 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -25.191 AMFE: -0.631 GC content %: 39.923 | |
| Taestivum_Traes_7DL_DA39C2B53.7 Traes_7DL_DA39C2B53.7 PAC:31826241 |
High | No | 2481 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -25.030 AMFE: -0.668 GC content %: 37.445 | |
| Taestivum_Traes_7DL_DA39C2B53.8 Traes_7DL_DA39C2B53.8 PAC:31826240 |
High | No | 1999 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -25.538 AMFE: -0.683 GC content %: 37.369 | |
| Taestivum_Traes_7DL_DA39C2B53.9 Traes_7DL_DA39C2B53.9 PAC:31826242 |
High | No | 1399 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -24.660 AMFE: -0.642 GC content %: 38.385 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
