GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7DL_F1CE81AEB Traes_7DL_F1CE81AEB	ta_iwgsc_7dl_v1_3313827	996	3246	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7DL_F1CE81AEB.1 Traes_7DL_F1CE81AEB.1 PAC:32008570	High	No	1374		Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -27.758 AMFE: -0.627 GC content %: 44.250
Taestivum_Traes_7DL_F1CE81AEB.2 Traes_7DL_F1CE81AEB.2 PAC:32008567	High	No	1375		Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -28.233 AMFE: -0.630 GC content %: 44.800
Taestivum_Traes_7DL_F1CE81AEB.3 Traes_7DL_F1CE81AEB.3 PAC:32008568	High	No	2114		Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -28.827 AMFE: -0.656 GC content %: 43.945
Taestivum_Traes_7DL_F1CE81AEB.4 Traes_7DL_F1CE81AEB.4 PAC:32008569	High	No	2163		Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -27.693 AMFE: -0.650 GC content %: 42.580

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).